Gene Information
|
Gene Name
|
PDXDC2P-NPIPB14P |
|
Gene ID
|
283970
|
|
Gene Full Name
|
PDXDC2P-NPIPB14P readthrough, transcribed pseudogene |
|
Gene Alias
|
- |
|
Transcripts
|
ENSG00000196696
|
|
Virus
|
HBV |
|
Gene Type
|
pseudo |
|
HGNC ID
|
HGNC:53158
|
|
Summary
|
This locus represents naturally-occurring readthrough transcription between two pseudogenes, PDXDC2P (pyridoxal dependent decarboxylase domain containing 2, pseudogene) and NPIPB14P (nuclear pore complex interacting protein family, member B14, pseudogene). The individual pseudogene loci are not curated as transcribed regions. Readthrough transcripts likely do not encode functional proteins. [provided by RefSeq, Feb 2017] |
Target gene [PDXDC2P-NPIPB14P] related to VISs 
Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section
| DVID |
Chromosome |
HM |
TFBS |
CA |
Sum of Overlapped Records |
Detail |
| 1041168 |
chr16 |
2 |
22 |
0 |
24 |
View |
| 1041169 |
chr16 |
2 |
22 |
0 |
24 |
View |
| 1042205 |
chr16 |
41 |
9 |
0 |
50 |
View |
Target gene [PDXDC2P-NPIPB14P] related to Omics data
| Data ID |
Experiment type |
Sample number |
Platform |
|
C GSE35465
|
Chip-seq;RNA-seq |
6 |
Illumina HiSeq 2000 (Homo sapiens) |
|
C GSE68402
|
Chip-seq |
26 |
Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens) |
|
C GSE270130
|
Chip-seq |
27 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
GSE224901
|
RNA-seq |
21 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
GSE100400
|
Chip-seq;RNA-seq;4C_cccDNA |
31 |
Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus) |
|
GSE173897
|
RNA-seq |
95 |
Illumina HiSeq 4000 (Homo sapiens) |
|
C GSE131257
|
ATAC-seq;RNA-seq |
19 |
Illumina HiSeq 2500 (Homo sapiens) |
|
GSE94660
|
RNA-seq |
42 |
Illumina HiSeq 2500 (Homo sapiens) |
When the gene can detect a peak in the dataset, a peak plot will be displayed.
> Dataset: GSE35465 - PDXDC2P-NPIPB14P peak across samples
|
Peak Plot
|
> Dataset: GSE68402 - PDXDC2P-NPIPB14P peak across samples
|
Peak Plot
|
> Dataset: GSE270130 - PDXDC2P-NPIPB14P peak across samples
|
Peak Plot
|
> Dataset: GSE131257 - PDXDC2P-NPIPB14P peak across samples
|
Peak Plot
|
|
|
HBV Target gene Detail Information
