HPV Target gene Detail Information

> PHAF1 Gene Search Result


Gene Information
Gene Name PHAF1
Gene ID 80262
Gene Full Name phagophore assembly factor 1
Gene Alias C16orf6|C16orf70|LIN10|MYTHO|lin-10
Transcripts ENSG00000125149
Virus HPV
Gene Type protein-coding
HPA Location Info Nuclear speckles;Nucleoli fibrillar center, Cytosol;
Membrane Info Predicted intracellular proteins
Uniport_ID Q9BSU1
HGNC ID HGNC:29564
Summary Predicted to be involved in Golgi to plasma membrane protein transport. Located in phagophore assembly site. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [PHAF1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5006956 chr16 5 11 4 20 View
5006957 chr16 22 7 0 29 View

Target gene [PHAF1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - PHAF1 peak across samples

Peak Plot

> Dataset: GSE143026 - PHAF1 peak across samples

Peak Plot