HBV Target gene Detail Information

> PTPRD Gene Search Result


Gene Information
Gene Name PTPRD
Gene ID 5789
Gene Full Name protein tyrosine phosphatase receptor type D
Gene Alias HPTP|HPTPD|HPTPDELTA|PTPD|R-PTP-delta|RPTPDELTA
Transcripts ENSG00000153707
Virus HBV
Gene Type protein-coding
HPA Location Info Vesicles;Nucleoplasm;Intracellular and membrane;
Membrane Info Enzymes, Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID P23468
HGNC ID HGNC:9668
OMIM ID 601598
Summary The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This PTP contains an extracellular region, a single transmembrane segment and two tandem intracytoplasmic catalytic domains, and thus represents a receptor-type PTP. The extracellular region of this protein is composed of three Ig-like and eight fibronectin type III-like domains. Studies of the similar genes in chicken and fly suggest the role of this PTP is in promoting neurite growth, and regulating neurons axon guidance. Multiple alternatively spliced transcript variants of this gene have been reported. A related pseudogene has been identified on chromosome 5. [provided by RefSeq, Jan 2010]
Target gene [PTPRD] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1009677 chr9 6 5 4 15 View
1009938 chr9 6 3 5 14 View
1011026 chr9 6 1 3 10 View
1013631 chr9 2 3 0 5 View
1014288 chr9 2 0 2 4 View
1015285 chr9 0 2 0 2 View
1015404 chr9 0 2 0 2 View
1015450 chr9 0 2 0 2 View
1015500 chr9 0 2 0 2 View
1017612 chr9 0 0 0 0 View
1017618 chr9 0 0 0 0 View
1018060 chr9 0 0 0 0 View
1018111 chr9 0 0 0 0 View
1018577 chr9 0 0 0 0 View
1020289 chr9 15 9 11 35 View
1020719 chr9 0 0 0 0 View
1021112 chr9 1 0 0 1 View
1021862 chr9 0 0 0 0 View
1021863 chr9 0 2 0 2 View
1024527 chr9 1 11 31 43 View
1040785 chr9 0 0 0 0 View
1043430 chr9 1 1 0 2 View
1043431 chr9 1 0 0 1 View
1043432 chr9 0 0 1 1 View
1043433 chr9 1 0 0 1 View
1043434 chr9 0 2 0 2 View

Target gene [PTPRD] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
GSE199850 scRNA-seq 1 HiSeq X Ten (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
E
 
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE100400 - PTPRD expression across samples

Volcano Plot

Bar Plot