HBV Target gene Detail Information

> RAPH1 Gene Search Result


Gene Information
Gene Name RAPH1
Gene ID 65059
Gene Full Name Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
Gene Alias ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6
Transcripts ENSG00000173166
Virus HBV
Gene Type protein-coding
HPA Location Info Nuclear bodies, Plasma membrane;Cytosol;
Membrane Info Predicted intracellular proteins
Uniport_ID Q70E73
HGNC ID HGNC:14436
OMIM ID 609035
Summary This gene encodes a protein that belongs to the Mig10/Rap1-interacting adaptor molecule/Lamellipodin family of adapter proteins, which function in cell migration. Members of this family contain pleckstrin-homology domains, Ras-association domains, and proline-rich C-termini. The protein encoded by this gene regulates actin dynamics through interaction with Ena/Vasodilator proteins as well as direct binding to filamentous actin to regulate actin network assembly. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2016]
Target gene [RAPH1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1008333 chr2 7 10 4 21 View
1012705 chr2 6 0 0 6 View
1041290 chr2 0 1 0 1 View
1041291 chr2 3 3 0 6 View
1042556 chr2 13 2 6 21 View

Target gene [RAPH1] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - RAPH1 peak across samples

Peak Plot

> Dataset: GSE68402 - RAPH1 peak across samples

Peak Plot

> Dataset: GSE270130 - RAPH1 peak across samples

Peak Plot

> Dataset: GSE100400 - RAPH1 peak across samples

Peak Plot

> Dataset: GSE131257 - RAPH1 peak across samples

Peak Plot