HBV Target gene Detail Information

> RBFOX1 Gene Search Result


Gene Information
Gene Name RBFOX1
Gene ID 54715
Gene Full Name RNA binding fox-1 homolog 1
Gene Alias 2BP1|A2BP1|FOX-1|FOX1|HRNBP1
Transcripts ENSG00000078328
Virus HBV
Gene Type protein-coding
HPA Location Info Nucleoplasm;Nucleoli fibrillar center, Golgi apparatus, Cytosol;
Membrane Info Predicted intracellular proteins
Uniport_ID Q9NWB1
HGNC ID HGNC:18222
OMIM ID 605104
Summary The Fox-1 family of RNA-binding proteins is evolutionarily conserved, and regulates tissue-specific alternative splicing in metazoa. Fox-1 recognizes a (U)GCAUG stretch in regulated exons or in flanking introns. The protein binds to the C-terminus of ataxin-2 and may contribute to the restricted pathology of spinocerebellar ataxia type 2 (SCA2). Ataxin-2 is the product of the SCA2 gene which causes familial neurodegenerative diseases. Fox-1 and ataxin-2 are both localized in the trans-Golgi network. Several alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2011]
Target gene [RBFOX1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1007614 chr16 21 4 0 25 View
1008989 chr16 9 8 1 18 View
1010764 chr16 11 0 0 11 View
1011487 chr16 9 0 0 9 View
1011767 chr16 7 1 0 8 View
1012903 chr16 0 6 0 6 View
1013552 chr16 2 1 2 5 View
1018241 chr16 0 0 0 0 View
1018592 chr16 0 0 0 0 View

Target gene [RBFOX1] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE68402 - RBFOX1 peak across samples

Peak Plot

> Dataset: GSE270130 - RBFOX1 peak across samples

Peak Plot

> Dataset: GSE100400 - RBFOX1 peak across samples

Peak Plot

> Dataset: GSE131257 - RBFOX1 peak across samples

Peak Plot