HTLV1 Target gene Detail Information

> RETREG1 Gene Search Result


Gene Information
Gene Name RETREG1
Gene ID 54463
Gene Full Name reticulophagy regulator 1
Gene Alias FAM134B|JK-1|JK1
Transcripts ENSG00000154153
Virus HTLV1
Gene Type protein-coding
HPA Location Info Endoplasmic reticulum;
Membrane Info Disease related genes, Human disease related genes, Potential drug targets, Predicted intracellular proteins, Predicted membrane proteins, Transporters
Uniport_ID Q9H6L5
HGNC ID HGNC:25964
OMIM ID 613114
Summary The protein encoded by this gene is a cis-Golgi transmembrane protein that may be necessary for the long-term survival of nociceptive and autonomic ganglion neurons. Mutations in this gene are a cause of hereditary sensory and autonomic neuropathy type IIB (HSAN IIB), and this gene may also play a role in susceptibility to vascular dementia. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Nov 2011]
Target gene [RETREG1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6008429 chr5 5 31 9 45 View
6009739 chr5 26 9 0 35 View

Target gene [RETREG1] related to Omics data
Data ID Experiment type Sample number Platform
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - RETREG1 peak across samples

Peak Plot