HTLV1 Target gene Detail Information

> RPGRIP1L Gene Search Result


Gene Information
Gene Name RPGRIP1L
Gene ID 23322
Gene Full Name RPGRIP1 like
Gene Alias COACH3|CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134
Transcripts ENSG00000103494
Virus HTLV1
Gene Type protein-coding
HPA Location Info Plasma membrane, Cytosol;Basal body;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins
Uniport_ID Q68CZ1
HGNC ID HGNC:29168
OMIM ID 610937
Summary The protein encoded by this gene can localize to the basal body-centrosome complex or to primary cilia and centrosomes in ciliated cells. The encoded protein has been found to interact with nephrocystin-4. Defects in this gene are a cause of Joubert syndrome type 7 (JBTS7) and Meckel syndrome type 5 (MKS5). [provided by RefSeq, Jun 2016]
Target gene [RPGRIP1L] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6008711 chr16 39 4 0 43 View
6021721 chr16 4 1 0 5 View

Target gene [RPGRIP1L] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - RPGRIP1L peak across samples

Peak Plot