HBV Target gene Detail Information

> SDC2 Gene Search Result


Gene Information
Gene Name SDC2
Gene ID 6383
Gene Full Name syndecan 2
Gene Alias CD362|HSPG|HSPG1|SYND2
Transcripts ENSG00000169439
Virus HBV
Gene Type protein-coding
HPA Location Info Plasma membrane;
Membrane Info CD markers, Predicted membrane proteins
Uniport_ID P34741
HGNC ID HGNC:10659
OMIM ID 142460
Summary The protein encoded by this gene is a transmembrane (type I) heparan sulfate proteoglycan and is a member of the syndecan proteoglycan family. The syndecans mediate cell binding, cell signaling, and cytoskeletal organization and syndecan receptors are required for internalization of the HIV-1 tat protein. The syndecan-2 protein functions as an integral membrane protein and participates in cell proliferation, cell migration and cell-matrix interactions via its receptor for extracellular matrix proteins. Altered syndecan-2 expression has been detected in several different tumor types. [provided by RefSeq, Jul 2008]
Target gene [SDC2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1003101 chr8 29 70 66 165 View
1003166 chr8 9 85 65 159 View
1003167 chr8 9 85 65 159 View
1003168 chr8 9 85 65 159 View
1003170 chr8 9 85 65 159 View
1003173 chr8 9 85 65 159 View
1003175 chr8 9 85 65 159 View
1003178 chr8 9 85 65 159 View
1003510 chr8 7 79 42 128 View
1003612 chr8 7 76 38 121 View
1003665 chr8 7 76 35 118 View
1004535 chr8 32 44 2 78 View
1008003 chr8 18 4 1 23 View
1011760 chr8 7 0 1 8 View
1013856 chr8 0 4 0 4 View
1024368 chr8 126 13 7 146 View
1043391 chr8 193 132 15 340 View

Target gene [SDC2] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
GSE199850 scRNA-seq 1 HiSeq X Ten (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - SDC2 peak across samples

Peak Plot

> Dataset: GSE68402 - SDC2 peak across samples

Peak Plot

> Dataset: GSE270130 - SDC2 peak across samples

Peak Plot

> Dataset: GSE100400 - SDC2 peak across samples

Peak Plot

> Dataset: GSE131257 - SDC2 peak across samples

Peak Plot