HTLV1 Target gene Detail Information

> SEC16A Gene Search Result


Gene Information
Gene Name SEC16A
Gene ID 9919
Gene Full Name SEC16 homolog A, endoplasmic reticulum export factor
Gene Alias KIAA0310|SEC16L|p250
Transcripts ENSG00000148396
Virus HTLV1
Gene Type protein-coding
HPA Location Info Golgi apparatus;Endoplasmic reticulum;
Membrane Info Predicted intracellular proteins
Uniport_ID O15027
HGNC ID HGNC:29006
OMIM ID 612854
Summary This gene encodes a protein that forms part of the Sec16 complex. This protein has a role in protein transport from the endoplasmic reticulum (ER) to the Golgi and mediates COPII vesicle formation at the transitional ER. Alternative splicing results in multiple transcript variants that encode different protein isoforms. [provided by RefSeq, Feb 2013]
Target gene [SEC16A] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6027664 chr9 2 0 0 2 View

Target gene [SEC16A] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SEC16A peak across samples

Peak Plot