HBV Target gene Detail Information

> SGCD Gene Search Result


Gene Information
Gene Name SGCD
Gene ID 6444
Gene Full Name sarcoglycan delta
Gene Alias 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD
Transcripts ENSG00000170624
Virus HBV
Gene Type protein-coding
HPA Location Info
Membrane Info Disease related genes, Human disease related genes, Predicted membrane proteins
Uniport_ID Q92629
HGNC ID HGNC:10807
OMIM ID 601411
Summary The protein encoded by this gene is one of the four known components of the sarcoglycan complex, which is a subcomplex of the dystrophin-glycoprotein complex (DGC). DGC forms a link between the F-actin cytoskeleton and the extracellular matrix. This protein is expressed most abundantly in skeletal and cardiac muscle. Mutations in this gene have been associated with autosomal recessive limb-girdle muscular dystrophy and dilated cardiomyopathy. Alternatively spliced transcript variants encoding distinct isoforms have been observed for this gene. [provided by RefSeq, Jul 2008]
Target gene [SGCD] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1000890 chr5 536 195 572 1303 View
1001692 chr5 428 27 66 521 View
1001717 chr5 419 27 70 516 View
1001736 chr5 406 28 73 507 View
1007427 chr5 7 1 19 27 View
1008326 chr5 5 1 15 21 View
1011888 chr5 8 0 0 8 View
1014599 chr5 3 0 0 3 View
1014934 chr5 3 0 0 3 View
1018613 chr5 0 0 0 0 View
1041466 chr5 37 21 1 59 View
1041467 chr5 37 21 1 59 View
1041468 chr5 37 21 1 59 View
1043115 chr5 4 0 0 4 View

Target gene [SGCD] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - SGCD peak across samples

Peak Plot

> Dataset: GSE68402 - SGCD peak across samples

Peak Plot

> Dataset: GSE270130 - SGCD peak across samples

Peak Plot

> Dataset: GSE100400 - SGCD peak across samples

Peak Plot

> Dataset: GSE131257 - SGCD peak across samples

Peak Plot