HBV Target gene Detail Information

> SHISA6 Gene Search Result


Gene Information
Gene Name SHISA6
Gene ID 388336
Gene Full Name shisa family member 6
Gene Alias -
Transcripts ENSG00000188803
Virus HBV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Plasma membrane;
Membrane Info Predicted membrane proteins, Transporters
Uniport_ID Q6ZSJ9
HGNC ID HGNC:34491
OMIM ID 617327
Summary Predicted to enable ionotropic glutamate receptor binding activity. Predicted to be involved in several processes, including excitatory chemical synaptic transmission; modulation of chemical synaptic transmission; and negative regulation of canonical Wnt signaling pathway. Predicted to be located in asymmetric, glutamatergic, excitatory synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine membrane; glutamatergic synapse; and postsynaptic density membrane. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [SHISA6] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1005595 chr17 50 1 0 51 View
1006380 chr17 7 2 30 39 View
1012670 chr17 6 0 0 6 View
1013780 chr17 4 0 0 4 View
1013876 chr17 4 0 0 4 View
1016770 chr17 1 0 0 1 View
1016771 chr17 1 0 0 1 View
1019693 chr17 0 0 0 0 View
1020612 chr17 4 0 0 4 View
1042231 chr17 18 6 2 26 View
1042232 chr17 4 0 0 4 View

Target gene [SHISA6] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - SHISA6 peak across samples

Peak Plot

> Dataset: GSE68402 - SHISA6 peak across samples

Peak Plot

> Dataset: GSE270130 - SHISA6 peak across samples

Peak Plot

> Dataset: GSE100400 - SHISA6 peak across samples

Peak Plot

> Dataset: GSE131257 - SHISA6 peak across samples

Peak Plot