HPV Target gene Detail Information

> SHLD1 Gene Search Result


Gene Information
Gene Name SHLD1
Gene ID 149840
Gene Full Name shieldin complex subunit 1
Gene Alias C20orf196|RINN3
Transcripts ENSG00000171984
Virus HPV
Gene Type protein-coding
HPA Location Info Endoplasmic reticulum, Golgi apparatus, Vesicles;
Membrane Info Predicted intracellular proteins
Uniport_ID Q8IYI0
HGNC ID HGNC:26318
OMIM ID 618028
Summary Involved in negative regulation of double-strand break repair via homologous recombination; positive regulation of double-strand break repair via nonhomologous end joining; and positive regulation of isotype switching. Located in site of double-strand break. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [SHLD1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5010106 chr20 54 9 13 76 View

Target gene [SHLD1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - SHLD1 peak across samples

Peak Plot

> Dataset: GSE143026 - SHLD1 peak across samples

Peak Plot