HTLV1 Target gene Detail Information

> SHLD1 Gene Search Result


Gene Information
Gene Name SHLD1
Gene ID 149840
Gene Full Name shieldin complex subunit 1
Gene Alias C20orf196|RINN3
Transcripts ENSG00000171984
Virus HTLV1
Gene Type protein-coding
HPA Location Info Endoplasmic reticulum, Golgi apparatus, Vesicles;
Membrane Info Predicted intracellular proteins
Uniport_ID Q8IYI0
HGNC ID HGNC:26318
OMIM ID 618028
Summary Involved in negative regulation of double-strand break repair via homologous recombination; positive regulation of double-strand break repair via nonhomologous end joining; and positive regulation of isotype switching. Located in site of double-strand break. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [SHLD1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6016815 chr20 10 1 0 11 View
6024006 chr20 3 1 0 4 View

Target gene [SHLD1] related to Omics data
Data ID Experiment type Sample number Platform
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SHLD1 peak across samples

Peak Plot