HBV Target gene Detail Information

> SLC12A4 Gene Search Result


Gene Information
Gene Name SLC12A4
Gene ID 6560
Gene Full Name solute carrier family 12 member 4
Gene Alias CTC-479C5.17|KCC1|hKCC1
Transcripts ENSG00000124067
Virus HBV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Cell Junctions;Cytokinetic bridge, Primary cilium;
Membrane Info FDA approved drug targets, Metabolic proteins, Predicted membrane proteins, Transporters
Uniport_ID Q9UP95
HGNC ID HGNC:10913
OMIM ID 604119
Summary This gene encodes a member of the SLC12A transporter family. The encoded protein mediates the coupled movement of potassium and chloride ions across the plasma membrane. This gene is expressed ubiquitously. Multiple alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jan 2013]
Target gene [SLC12A4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1016835 chr16 0 1 0 1 View

Target gene [SLC12A4] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
GSE100400 Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - SLC12A4 peak across samples

Peak Plot

> Dataset: GSE68402 - SLC12A4 peak across samples

Peak Plot

> Dataset: GSE270130 - SLC12A4 peak across samples

Peak Plot

> Dataset: GSE131257 - SLC12A4 peak across samples

Peak Plot