HPV Target gene Detail Information

> SLC49A4 Gene Search Result


Gene Information
Gene Name SLC49A4
Gene ID 84925
Gene Full Name solute carrier family 49 member 4
Gene Alias DIRC2|RCC4
Transcripts ENSG00000138463
Virus HPV
Gene Type protein-coding
HPA Location Info Vesicles;
Membrane Info Disease related genes, Potential drug targets, Predicted membrane proteins, Transporters
Uniport_ID Q96SL1
HGNC ID HGNC:16628
OMIM ID 602773
Summary This gene encodes a membrane-bound protein from the major facilitator superfamily of transporters. Disruption of this gene by translocation has been associated with haplo-insufficiency and renal cell carcinomas. Alternatively spliced transcript variants have been described, but their biological validity has not yet been determined. [provided by RefSeq, Jul 2008]
Target gene [SLC49A4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5002815 chr3 7 0 0 7 View

Target gene [SLC49A4] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - SLC49A4 peak across samples

Peak Plot

> Dataset: GSE143026 - SLC49A4 peak across samples

Peak Plot