HTLV1 Target gene Detail Information

> SMS Gene Search Result


Gene Information
Gene Name SMS
Gene ID 6611
Gene Full Name spermine synthase
Gene Alias MRSR|MRXSSR|SPMSY|SRS|SpS
Transcripts ENSG00000102172
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nuclear bodies;Cytosol;
Membrane Info Disease related genes, Enzymes, Human disease related genes, Metabolic proteins, Predicted intracellular proteins
Uniport_ID P52788
HGNC ID HGNC:11123
OMIM ID 300105
Summary This gene encodes a protein belonging to the spermidine/spermin synthase family and catalyzes the production of spermine from spermidine. Pseudogenes of this gene are located on chromosomes 1, 5, 6 and X. Mutations in this gene cause an X-linked intellectual disability called Snyder-Robinson Syndrome (SRS). Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2017]
Target gene [SMS] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6009786 chrX 31 4 0 35 View
6026924 chrX 2 0 0 2 View

Target gene [SMS] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SMS peak across samples

Peak Plot