HTLV1 Target gene Detail Information

> SNHG10 Gene Search Result


Gene Information
Gene Name SNHG10
Gene ID 283596
Gene Full Name small nucleolar RNA host gene 10
Gene Alias C14orf62|LINC00063|NCRNA00063|TP53LC16
Transcripts ENSG00000247092
Virus HTLV1
Gene Type ncRNA
HGNC ID HGNC:27510
lncRNASNP2 ID SNHG10
Summary This gene is small nucleolar RNA host gene 10 and represents a non-protein coding RNA. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jan 2013]
Target gene [SNHG10] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6000672 chr14 915 81 8 1004 View

Target gene [SNHG10] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SNHG10 peak across samples

Peak Plot