HTLV1 Target gene Detail Information

> SNTG2 Gene Search Result


Gene Information
Gene Name SNTG2
Gene ID 54221
Gene Full Name syntrophin gamma 2
Gene Alias G2SYN|SYN5
Transcripts ENSG00000172554
Virus HTLV1
Gene Type protein-coding
HPA Location Info Plasma membrane;Nucleoplasm;
Membrane Info Predicted intracellular proteins
Uniport_ID Q9NY99
HGNC ID HGNC:13741
OMIM ID 608715
Summary This gene encodes a protein belonging to the syntrophin family. Syntrophins are cytoplasmic peripheral membrane proteins that bind to components of mechanosenstive sodium channels and the extreme carboxy-terminal domain of dystrophin and dystrophin-related proteins. The PDZ domain of this protein product interacts with a protein component of a mechanosensitive sodium channel that affects channel gating. Absence or reduction of this protein product has been associated with Duchenne muscular dystrophy. There is evidence of alternative splicing yet the full-length nature of these variants has not been described. [provided by RefSeq, Jul 2008]
Target gene [SNTG2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6004690 chr2 85 21 1 107 View
6020509 chr2 1 6 0 7 View
6032144 chr2 0 0 0 0 View

Target gene [SNTG2] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SNTG2 peak across samples

Peak Plot