HTLV1 Target gene Detail Information

> SOX2-OT Gene Search Result


Gene Information
Gene Name SOX2-OT
Gene ID 347689
Gene Full Name SOX2 overlapping transcript
Gene Alias NCRNA00043|SOX2OT
Transcripts ENSG00000242808
Virus HTLV1
Gene Type ncRNA
HGNC ID HGNC:20209
OMIM ID 616338
lncRNASNP2 ID SOX2-OT
Summary This gene produces alternatively spliced long non-coding RNAs. These RNAs were observed to be upregulated in tumor cells and positively correlated to expression of the SRY-box 2 gene. Overexpression of these transcripts may promote cell proliferation. [provided by RefSeq, Dec 2017]
Target gene [SOX2-OT] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6023614 chr3 2 2 0 4 View

Target gene [SOX2-OT] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SOX2-OT peak across samples

Peak Plot