HBV Target gene Detail Information

> SPOCK1 Gene Search Result


Gene Information
Gene Name SPOCK1
Gene ID 6695
Gene Full Name SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1
Gene Alias SPOCK|TESTICAN|TIC1
Transcripts ENSG00000152377
Virus HBV
Gene Type protein-coding
HPA Location Info Vesicles;Secreted to blood;
Membrane Info Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID Q08629
HGNC ID HGNC:11251
OMIM ID 602264
Summary This gene encodes the protein core of a seminal plasma proteoglycan containing chondroitin- and heparan-sulfate chains. The protein's function is unknown, although similarity to thyropin-type cysteine protease-inhibitors suggests its function may be related to protease inhibition. [provided by RefSeq, Jul 2008]
Target gene [SPOCK1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1002400 chr5 75 59 145 279 View
1012185 chr5 5 2 0 7 View
1012671 chr5 6 0 0 6 View
1013969 chr5 4 0 0 4 View
1013978 chr5 4 0 0 4 View
1040434 chr5 11 4 0 15 View
1040435 chr5 11 4 0 15 View
1040436 chr5 12 4 0 16 View
1040437 chr5 12 4 0 16 View
1040438 chr5 12 4 0 16 View
1040439 chr5 12 4 0 16 View
1040440 chr5 13 4 0 17 View
1040441 chr5 13 4 0 17 View
1040442 chr5 13 4 0 17 View
1043099 chr5 3 0 1 4 View

Target gene [SPOCK1] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
S
  GSE199850 		scRNA-seq 1 HiSeq X Ten (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a feature/violin plot will be displayed.


> Dataset: GSE199850 - Gene expression in cell subsets