HBV Target gene Detail Information

> SPTLC3 Gene Search Result


Gene Information
Gene Name SPTLC3
Gene ID 55304
Gene Full Name serine palmitoyltransferase long chain base subunit 3
Gene Alias C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b
Transcripts ENSG00000172296
Virus HBV
Gene Type protein-coding
HPA Location Info Microtubules;
Membrane Info Enzymes, Metabolic proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q9NUV7
HGNC ID HGNC:16253
OMIM ID 611120
Summary This gene encodes a subunit of the serine palmitoyltransferase complex which catalyzes the rate-limiting step in sphingolipid biosynthesis. This subunit metabolizes lauroyl- and myristoyl-CoA and generates C14 and C16-sphingoid bases. [provided by RefSeq, Mar 2017]
Target gene [SPTLC3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1005283 chr20 8 15 34 57 View
1013502 chr20 5 0 0 5 View
1014965 chr20 3 0 0 3 View
1019545 chr20 0 0 0 0 View
1042652 chr20 1 0 5 6 View

Target gene [SPTLC3] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - SPTLC3 peak across samples

Peak Plot

> Dataset: GSE68402 - SPTLC3 peak across samples

Peak Plot

> Dataset: GSE270130 - SPTLC3 peak across samples

Peak Plot

> Dataset: GSE100400 - SPTLC3 peak across samples

Peak Plot

> Dataset: GSE131257 - SPTLC3 peak across samples

Peak Plot