HBV Target gene Detail Information

> SYNDIG1 Gene Search Result


Gene Information
Gene Name SYNDIG1
Gene ID 79953
Gene Full Name synapse differentiation inducing 1
Gene Alias C20orf39|DSPC2|IFITMD5|TMEM90B
Transcripts ENSG00000101463
Virus HBV
Gene Type protein-coding
HPA Location Info Vesicles;
Membrane Info Predicted membrane proteins, Transporters
Uniport_ID Q9H7V2
HGNC ID HGNC:15885
OMIM ID 614311
Summary This gene encodes a protein that belongs to the interferon-induced transmembrane family of proteins. A similar protein in rat is thought to regulate the development of excitatory synapses. [provided by RefSeq, Jul 2013]
Target gene [SYNDIG1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1006078 chr20 18 14 12 44 View
1010910 chr20 9 1 0 10 View
1011208 chr20 10 0 0 10 View
1022904 chr20 9 1 0 10 View

Target gene [SYNDIG1] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
GSE100400 Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - SYNDIG1 peak across samples

Peak Plot

> Dataset: GSE68402 - SYNDIG1 peak across samples

Peak Plot

> Dataset: GSE270130 - SYNDIG1 peak across samples

Peak Plot

> Dataset: GSE131257 - SYNDIG1 peak across samples

Peak Plot