HTLV1 Target gene Detail Information

> TAF4B Gene Search Result


Gene Information
Gene Name TAF4B
Gene ID 6875
Gene Full Name TATA-box binding protein associated factor 4b
Gene Alias SPGF13|TAF2C2|TAFII105
Transcripts ENSG00000141384
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;Nucleoli fibrillar center;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins
Uniport_ID Q92750
HGNC ID HGNC:11538
OMIM ID 601689
Summary TATA binding protein (TBP) and TBP-associated factors (TAFs) participate in the formation of the TFIID protein complex, which is involved in initiation of transcription of genes by RNA polymerase II. This gene encodes a cell type-specific TAF that may be responsible for mediating transcription by a subset of activators in B cells. Three transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Jun 2014]
Target gene [TAF4B] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6018355 chr18 7 2 0 9 View
6030281 chr18 0 1 0 1 View

Target gene [TAF4B] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - TAF4B peak across samples

Peak Plot