HTLV1 Target gene Detail Information

> TAFA1 Gene Search Result


Gene Information
Gene Name TAFA1
Gene ID 407738
Gene Full Name TAFA chemokine like family member 1
Gene Alias FAM19A1|TAFA-1
Transcripts ENSG00000183662
Virus HTLV1
Gene Type protein-coding
HPA Location Info Secreted in brain;
Membrane Info Predicted secreted proteins
Uniport_ID Q7Z5A9
HGNC ID HGNC:21587
OMIM ID 617495
Summary This gene is a member of the TAFA family which is composed of five highly homologous genes that encode small secreted proteins. These proteins contain conserved cysteine residues at fixed positions, and are distantly related to MIP-1alpha, a member of the CC-chemokine family. The TAFA proteins are predominantly expressed in specific regions of the brain, and are postulated to function as brain-specific chemokines or neurokines that act as regulators of immune and nervous cells. [provided by RefSeq, Jul 2008]
Target gene [TAFA1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6006469 chr3 64 3 1 68 View
6017760 chr3 7 3 0 10 View
6018969 chr3 1 2 5 8 View
6019832 chr3 2 1 4 7 View
6024071 chr3 0 0 4 4 View
6028381 chr3 1 0 0 1 View
6031957 chr3 0 0 0 0 View

Target gene [TAFA1] related to Omics data
Data ID Experiment type Sample number Platform
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - TAFA1 peak across samples

Peak Plot