HTLV1 Target gene Detail Information

> TAFA2 Gene Search Result


Gene Information
Gene Name TAFA2
Gene ID 338811
Gene Full Name TAFA chemokine like family member 2
Gene Alias FAM19A2|TAFA-2
Transcripts ENSG00000198673
Virus HTLV1
Gene Type protein-coding
HPA Location Info Intracellular and membrane;
Membrane Info Predicted intracellular proteins
Uniport_ID Q8N3H0
HGNC ID HGNC:21589
OMIM ID 617496
Summary This gene is a member of the TAFA family which is composed of five highly homologous genes that encode small secreted proteins. These proteins contain conserved cysteine residues at fixed positions, and are distantly related to MIP-1alpha, a member of the CC-chemokine family. The TAFA proteins are predominantly expressed in specific regions of the brain, and are postulated to function as brain-specific chemokines or neurokines, that act as regulators of immune and nervous cells. [provided by RefSeq, Jul 2008]
Target gene [TAFA2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6008177 chr12 26 9 13 48 View
6016332 chr12 2 10 0 12 View
6020086 chr12 3 3 1 7 View
6027370 chr12 1 1 0 2 View
6030706 chr12 0 0 0 0 View
6030921 chr12 0 0 0 0 View

Target gene [TAFA2] related to Omics data
Data ID Experiment type Sample number Platform
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - TAFA2 peak across samples

Peak Plot