HPV Target gene Detail Information

> TAFA4 Gene Search Result


Gene Information
Gene Name TAFA4
Gene ID 151647
Gene Full Name TAFA chemokine like family member 4
Gene Alias FAM19A4|TAFA-4
Transcripts ENSG00000163377
Virus HPV
Gene Type protein-coding
HPA Location Info Secreted in brain;
Membrane Info Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID Q96LR4
HGNC ID HGNC:21591
OMIM ID 617498
Summary This gene is a member of the TAFA family which is composed of five highly homologous genes that encode small secreted proteins. These proteins contain conserved cysteine residues at fixed positions, and are distantly related to MIP-1alpha, a member of the CC-chemokine family. The TAFA proteins are predominantly expressed in specific regions of the brain, and are postulated to function as brain-specific chemokines or neurokines, that act as regulators of immune and nervous cells. Alternatively spliced transcript variants have been observed for this gene. [provided by RefSeq, Nov 2011]
Target gene [TAFA4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5010952 chr3 1 1 0 2 View

Target gene [TAFA4] related to Omics data
Data ID Experiment type Sample number Platform
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - TAFA4 peak across samples

Peak Plot