HTLV1 Target gene Detail Information

> TMX2-CTNND1 Gene Search Result


Gene Information
Gene Name TMX2-CTNND1
Gene ID 100528016
Gene Full Name TMX2-CTNND1 readthrough (NMD candidate)
Gene Alias CAS|CTNND1|p120(cas)|p120(ctn)
Transcripts ENSG00000288534
Virus HTLV1
Gene Type ncRNA
HGNC ID HGNC:41992
Summary This locus represents naturally occurring read-through transcription between the neighboring TMX2 (thioredoxin-related transmembrane protein 2) and CTNND1 (catenin, cadherin-associated protein, delta 1) genes on chromosome 11. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is therefore unlikely to produce a protein product. [provided by RefSeq, Dec 2010]
Target gene [TMX2-CTNND1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6020684 chr11 6 0 0 6 View
6029391 chr11 1 0 0 1 View

Target gene [TMX2-CTNND1] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - TMX2-CTNND1 peak across samples

Peak Plot