HTLV1 Target gene Detail Information

> TRIM34 Gene Search Result


Gene Information
Gene Name TRIM34
Gene ID 53840
Gene Full Name tripartite motif containing 34
Gene Alias IFP1|RNF21
Transcripts ENSG00000258659
Virus HTLV1
Gene Type protein-coding
HPA Location Info Centrosome;Nucleoli;
Membrane Info Enzymes, Predicted intracellular proteins
Uniport_ID Q9BYJ4
HGNC ID HGNC:10063
OMIM ID 605684
Summary The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, B-box type 1 and B-box type 2 domain, and a coiled-coil region. Expression of this gene is up-regulated by interferon. This gene is mapped to chromosome 11p15, where it resides within a TRIM gene cluster. Alternative splicing results in multiple transcript variants. A read-through transcript from the upstream TRIM6 gene has also been observed, which results in a fusion product from these neighboring family members. [provided by RefSeq, Oct 2010]
Target gene [TRIM34] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6013371 chr11 18 1 0 19 View
6016883 chr11 9 2 0 11 View

Target gene [TRIM34] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - TRIM34 peak across samples

Peak Plot