HTLV1 Target gene Detail Information

> VMP1 Gene Search Result


Gene Information
Gene Name VMP1
Gene ID 81671
Gene Full Name vacuole membrane protein 1
Gene Alias EPG3|TANGO5|TMEM49
Transcripts ENSG00000062716
Virus HTLV1
Gene Type protein-coding
HPA Location Info Endoplasmic reticulum;Nucleoli;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins, Transporters
Uniport_ID Q96GC9
HGNC ID HGNC:29559
OMIM ID 611753
Summary This gene encodes a transmembrane protein that plays a key regulatory role in the process of autophagy. The ectopic overexpression of the encoded protein in cultured cells triggers autophagy even under nutrient-rich conditions. This gene is overexpressed in pancreatitis affected acinar cells where the encoded protein mediates sequestration and degradation of potentially deleterious activated zymogen granules in a process termed, zymophagy. [provided by RefSeq, Jul 2016]
Target gene [VMP1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6010973 chr17 24 4 0 28 View
6014689 chr17 12 4 0 16 View

Target gene [VMP1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - VMP1 peak across samples

Peak Plot