HTLV1 Target gene Detail Information

> AFAP1 Gene Search Result


Gene Information
Gene Name AFAP1
Gene ID 60312
Gene Full Name actin filament associated protein 1
Gene Alias AFAP|AFAP-110|AFAP110
Transcripts ENSG00000196526
Virus HTLV1
Gene Type protein-coding
HPA Location Info Actin filaments;Focal adhesion sites, Cytosol;
Membrane Info Predicted intracellular proteins
Uniport_ID Q8N556
HGNC ID HGNC:24017
OMIM ID 608252
Summary The protein encoded by this gene is a Src binding partner. It may represent a potential modulator of actin filament integrity in response to cellular signals, and may function as an adaptor protein by linking Src family members and/or other signaling proteins to actin filaments. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2008]
Target gene [AFAP1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6005431 chr4 8 49 31 88 View
6014355 chr4 7 9 0 16 View
6014357 chr4 7 9 0 16 View
6014364 chr4 7 9 0 16 View
6014369 chr4 7 9 0 16 View
6014377 chr4 7 9 0 16 View
6014380 chr4 7 9 0 16 View
6018754 chr4 5 2 2 9 View
6029322 chr4 1 0 0 1 View

Target gene [AFAP1] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - AFAP1 peak across samples

Peak Plot