HTLV1 Target gene Detail Information

> AGAP1 Gene Search Result


Gene Information
Gene Name AGAP1
Gene ID 116987
Gene Full Name ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
Gene Alias AGAP-1|CENTG2|GGAP1|cnt-g2
Transcripts ENSG00000157985
Virus HTLV1
Gene Type protein-coding
HPA Location Info
Membrane Info Plasma proteins, Predicted intracellular proteins
Uniport_ID Q9UPQ3
HGNC ID HGNC:16922
OMIM ID 608651
Summary This gene encodes a member of an ADP-ribosylation factor GTPase-activating protein family involved in membrane trafficking and cytoskeleton dynamics. This gene functions as a direct regulator of the adaptor-related protein complex 3 on endosomes. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011]
Target gene [AGAP1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6005943 chr2 73 4 1 78 View
6006056 chr2 70 5 1 76 View
6007516 chr2 50 4 0 54 View
6008494 chr2 23 20 1 44 View
6009586 chr2 34 2 0 36 View
6011422 chr2 25 1 0 26 View
6016473 chr2 3 9 0 12 View
6018169 chr2 9 0 0 9 View
6023603 chr2 1 2 1 4 View
6027739 chr2 1 1 0 2 View

Target gene [AGAP1] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - AGAP1 peak across samples

Peak Plot