HTLV1 Target gene Detail Information

> ARHGEF28 Gene Search Result


Gene Information
Gene Name ARHGEF28
Gene ID 64283
Gene Full Name Rho guanine nucleotide exchange factor 28
Gene Alias RGNEF|RIP2|p190RHOGEF
Transcripts ENSG00000214944
Virus HTLV1
Gene Type protein-coding
HPA Location Info Microtubules, Cytosol;Plasma membrane;
Membrane Info Predicted intracellular proteins
Uniport_ID Q8N1W1
HGNC ID HGNC:30322
OMIM ID 612790
Summary This gene encodes a member of the Rho guanine nucleotide exchange factor family. The encoded protein interacts with low molecular weight neurofilament mRNA and may be involved in the formation of amyotrophic lateral sclerosis neurofilament aggregates. Alternate splicing results in multiple transcript variants.[provided by RefSeq, Apr 2010]
Target gene [ARHGEF28] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6004014 chr5 81 35 16 132 View
6007500 chr5 9 46 0 55 View

Target gene [ARHGEF28] related to Omics data
Data ID Experiment type Sample number Platform
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - ARHGEF28 peak across samples

Peak Plot