Gene Information
|
Gene Name
|
ARID4B |
|
Gene ID
|
51742
|
|
Gene Full Name
|
AT-rich interaction domain 4B |
|
Gene Alias
|
BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 |
|
Transcripts
|
ENSG00000054267
|
|
Virus
|
HTLV1 |
|
Gene Type
|
protein-coding |
|
HPA Location Info
|
Mitochondria, Cytosol;Nucleoplasm; 
|
|
Membrane Info
|
Metabolic proteins, Predicted intracellular proteins, Transcription factors |
|
Uniport_ID
|
Q4LE39
|
|
HGNC ID
|
HGNC:15550
|
|
OMIM ID
|
609696 |
|
Summary
|
This gene encodes a protein with sequence similarity to retinoblastoma-binding protein-1. The encoded protein is a subunit of the histone deacetylase-dependant SIN3A transcriptional corepressor complex, which functions in diverse cellular processes including proliferation, differentiation, apoptosis, oncogenesis, and cell fate determination. The gene product is recognized by IgG antibody isolated from a breast cancer patient and appears to be a molecular marker associated with a broad range of human malignancies. Alternate transcriptional splice variants encoding different isoforms have been characterized. [provided by RefSeq, Jul 2008] |
Target gene [ARID4B] related to VISs 
Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section
| DVID |
Chromosome |
HM |
TFBS |
CA |
Sum of Overlapped Records |
Detail |
| 6001133 |
chr1 |
415 |
50 |
106 |
571 |
View |
| 6003288 |
chr1 |
111 |
46 |
12 |
169 |
View |
Target gene [ARID4B] related to Omics data
| Data ID |
Experiment type |
Sample number |
Platform |
|
GSE189602
|
Methylation profiling (Array) |
4 |
Infinium MethylationEPIC |
|
C GSE94732
|
Chip-seq |
24 |
Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens) |
|
GSE52244
|
Expression array |
15 |
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] |
|
GSE10789
|
Expression array |
6 |
NCI/ATC Hs-OperonV3 |
|
GSE224047
|
RNA-seq |
10 |
Illumina NextSeq 500 (Homo sapiens) |
|
GSE168557
|
Expression array |
6 |
Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version) |
|
GSE136189
|
Methylation profiling (Array) |
40 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip |
When the gene can detect a peak in the dataset, a peak plot will be displayed.
> Dataset: GSE94732 - ARID4B peak across samples
|
Peak Plot
|
|
|
HTLV1 Target gene Detail Information
