HBV Target gene Detail Information

> ATG2B Gene Search Result


Gene Information
Gene Name ATG2B
Gene ID 55102
Gene Full Name autophagy related 2B
Gene Alias BLTP4B|C14orf103
Transcripts ENSG00000066739
Virus HBV
Gene Type protein-coding
HPA Location Info Endoplasmic reticulum, Vesicles;
Membrane Info Predicted intracellular proteins, Transporters
Uniport_ID Q96BY7
HGNC ID HGNC:20187
OMIM ID 616226
Summary This gene encodes a protein required for autophagy. The encoded protein is involved in autophagosome formation. A germline duplication of a region that includes this gene is associated with predisposition to myeloid malignancies. [provided by RefSeq, Jul 2016]
Target gene [ATG2B] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1039425 chr14 12 2 4 18 View
1039426 chr14 12 2 4 18 View
1039427 chr14 12 2 4 18 View
1039428 chr14 12 2 4 18 View
1039429 chr14 12 2 4 18 View
1039430 chr14 12 2 4 18 View
1039431 chr14 12 2 4 18 View
1039432 chr14 12 2 4 18 View
1039433 chr14 12 2 4 18 View
1039434 chr14 12 2 4 18 View
1039435 chr14 12 2 4 18 View
1039436 chr14 12 2 4 18 View
1039437 chr14 12 2 4 18 View
1039438 chr14 12 2 4 18 View
1039439 chr14 12 2 4 18 View

Target gene [ATG2B] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
GSE247322 scRNA-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
E
 
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE100400 - ATG2B expression across samples

Volcano Plot

Bar Plot