HTLV1 Target gene Detail Information

> BEAN1 Gene Search Result


Gene Information
Gene Name BEAN1
Gene ID 146227
Gene Full Name brain expressed associated with NEDD4 1
Gene Alias BEAN|SCA31
Transcripts ENSG00000166546
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;Centrosome;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q3B7T3
HGNC ID HGNC:24160
OMIM ID 612051
Summary The protein encoded by this gene is one of several proteins that interact with NEDD4, a member of a family of ubiquitin-protein ligases. These proteins have PY motifs in common that bind to the WW domains of NEDD4. NEDD4 is developmentally regulated, and is highly expressed in embryonic tissues. Mutations in this gene (i.e., intronic insertions of >100 copies of pentanucleotide repeats including a (TGGAA)n sequence) are associated with spinocerebellar ataxia type 31. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2010]
Target gene [BEAN1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6013804 chr16 17 1 0 18 View
6019990 chr16 3 4 0 7 View
6021301 chr16 6 0 0 6 View
6025501 chr16 0 1 2 3 View
6028150 chr16 0 1 0 1 View

Target gene [BEAN1] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - BEAN1 peak across samples

Peak Plot