HTLV1 Target gene Detail Information

> BRINP3 Gene Search Result


Gene Information
Gene Name BRINP3
Gene ID 339479
Gene Full Name BMP/retinoic acid inducible neural specific 3
Gene Alias DBCCR1L|DBCCR1L1|FAM5C
Transcripts ENSG00000162670
Virus HTLV1
Gene Type protein-coding
HPA Location Info Secreted in other tissues;
Membrane Info Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID Q76B58
HGNC ID HGNC:22393
OMIM ID 618390
Summary This gene is overexpressed in pituitary tumors but is underexpressed in tongue squamous cell carcinomas, ulcerative colitis, and peri-implantitis. Polymorphisms that increase expression of this gene have been shown to increase vascular inflammation, and an association of this gene with myocardial infarction has been demonstrated. Finally, hypermethylation of this gene may find usefulness as a biomarker for gastric cancer. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2015]
Target gene [BRINP3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6004622 chr1 110 0 0 110 View
6015889 chr1 9 4 0 13 View
6020537 chr1 0 5 2 7 View
6022266 chr1 4 0 1 5 View
6025117 chr1 0 3 0 3 View
6028340 chr1 0 1 0 1 View
6029876 chr1 0 1 0 1 View
6031535 chr1 0 0 0 0 View
6032423 chr1 0 0 0 0 View

Target gene [BRINP3] related to Omics data
Data ID Experiment type Sample number Platform
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - BRINP3 peak across samples

Peak Plot