HTLV1 Target gene Detail Information

> C1GALT1 Gene Search Result


Gene Information
Gene Name C1GALT1
Gene ID 56913
Gene Full Name core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Gene Alias C1GALT|T-synthase
Transcripts ENSG00000106392
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nuclear bodies, Cytosol;
Membrane Info Enzymes, Metabolic proteins, Predicted intracellular proteins
Uniport_ID Q9NS00
HGNC ID HGNC:24337
OMIM ID 610555
Summary The protein encoded by this gene generates the common core 1 O-glycan structure, Gal-beta-1-3GalNAc-R, by the transfer of Gal from UDP-Gal to GalNAc-alpha-1-R. Core 1 is a precursor for many extended mucin-type O-glycans on cell surface and secreted glycoproteins. Studies in mice suggest that this gene plays a key role in thrombopoiesis and kidney homeostasis.[provided by RefSeq, Sep 2010]
Target gene [C1GALT1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6000824 chr7 725 38 52 815 View
6010142 chr7 12 18 3 33 View
6013014 chr7 15 5 0 20 View
6032019 chr7 0 0 0 0 View

Target gene [C1GALT1] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - C1GALT1 peak across samples

Peak Plot