HTLV1 Target gene Detail Information

> CADM2 Gene Search Result


Gene Information
Gene Name CADM2
Gene ID 253559
Gene Full Name cell adhesion molecule 2
Gene Alias IGSF4D|NECL3|Necl-3|SynCAM 2|SynCAM-2|synCAM2
Transcripts ENSG00000175161
Virus HTLV1
Gene Type protein-coding
HPA Location Info
Membrane Info Predicted membrane proteins
Uniport_ID Q8N3J6
HGNC ID HGNC:29849
OMIM ID 609938
Summary This gene encodes a member of the synaptic cell adhesion molecule 1 (SynCAM) family which belongs to the immunoglobulin (Ig) superfamily. The encoded protein has three Ig-like domains and a cytosolic protein 4.1 binding site near the C-terminus. Proteins belonging to the protein 4.1 family crosslink spectrin and interact with other cytoskeletal proteins. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2012]
Target gene [CADM2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6008052 chr3 5 42 2 49 View
6011401 chr3 18 8 0 26 View
6011740 chr3 0 25 0 25 View
6015911 chr3 0 13 0 13 View
6016106 chr3 13 0 0 13 View
6018551 chr3 7 2 0 9 View
6019601 chr3 2 5 1 8 View
6021263 chr3 2 4 0 6 View
6023621 chr3 4 0 0 4 View
6027505 chr3 1 1 0 2 View
6027536 chr3 0 2 0 2 View
6029518 chr3 1 0 0 1 View
6029884 chr3 0 1 0 1 View
6029982 chr3 1 0 0 1 View
6030190 chr3 1 0 0 1 View
6030323 chr3 1 0 0 1 View
6031794 chr3 0 0 0 0 View
6032950 chr3 0 0 0 0 View
6033015 chr3 0 0 0 0 View

Target gene [CADM2] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - CADM2 peak across samples

Peak Plot