HPV Target gene Detail Information

> CASC17 Gene Search Result


Gene Information
Gene Name CASC17
Gene ID 101928165
Gene Full Name cancer susceptibility 17
Gene Alias LINC00600
Transcripts ENSG00000260785
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:43911
lncRNASNP2 ID CASC17
Target gene [CASC17] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5004760 chr17 1 0 0 1 View
5010851 chr17 1 1 0 2 View
5010893 chr17 0 0 0 0 View

Target gene [CASC17] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - CASC17 peak across samples

Peak Plot

> Dataset: GSE143026 - CASC17 peak across samples

Peak Plot