HPV Target gene Detail Information

> CASC19 Gene Search Result


Gene Information
Gene Name CASC19
Gene ID 103021165
Gene Full Name cancer susceptibility 19
Gene Alias CARLO6|CARLo-6|LINC01245
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:49476
OMIM ID 617703
Target gene [CASC19] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5014456 chr8 70 2 0 72 View
5014457 chr8 144 497 70 711 View
5014458 chr8 151 147 0 298 View
5016368 chr8 211 74 10 295 View
5016369 chr8 259 46 3 308 View
5016370 chr8 84 14 7 105 View
5016371 chr8 470 68 134 672 View
5016372 chr8 458 67 128 653 View

Target gene [CASC19] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - CASC19 peak across samples

Peak Plot

> Dataset: GSE143026 - CASC19 peak across samples

Peak Plot