HPV Target gene Detail Information

> CCAT1 Gene Search Result


Gene Information
Gene Name CCAT1
Gene ID 100507056
Gene Full Name colon cancer associated transcript 1
Gene Alias CARLO5|CARLo-5|onco-lncRNA-40
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:45128
OMIM ID 617705
Summary This gene produces a long non-coding RNA that promotes tumor formation and is upregulated in colon cancer and other cancer cell types. This transcript may regulate long range chromosomal interactions, including at the Myc oncoprotein locus. This RNA may also function as a molecular sponge for microRNAs. [provided by RefSeq, Dec 2017]
Target gene [CCAT1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5001233 chr8 33 9 0 42 View
5001252 chr8 32 9 0 41 View
5001253 chr8 32 9 0 41 View
5001254 chr8 32 9 0 41 View
5001255 chr8 33 8 0 41 View
5001308 chr8 31 8 0 39 View
5001381 chr8 28 8 0 36 View
5001606 chr8 20 7 0 27 View
5002065 chr8 15 1 0 16 View
5002164 chr8 14 0 0 14 View
5010080 chr8 15 0 0 15 View
5010081 chr8 79 7 0 86 View
5010082 chr8 19 4 0 23 View
5010083 chr8 16 1 0 17 View
5012051 chr8 9 0 0 9 View
5012058 chr8 9 0 0 9 View
5012059 chr8 9 0 0 9 View

Target gene [CCAT1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - CCAT1 peak across samples

Peak Plot

> Dataset: GSE143026 - CCAT1 peak across samples

Peak Plot