HPV Target gene Detail Information

> CCAT2 Gene Search Result


Gene Information
Gene Name CCAT2
Gene ID 101805488
Gene Full Name colon cancer associated transcript 2
Gene Alias LINC00873|NCCP1
Transcripts ENSG00000280997
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:47044
OMIM ID 619403
lncRNASNP2 ID CCAT2
Summary This gene produces a long non-coding RNA that is upregulated in colon cancer and other cancers. This transcript promotes cell proliferation and suppresses apoptosis. It negatively regulates the biogenesis of microRNA 145. [provided by RefSeq, Dec 2017]
Target gene [CCAT2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5016378 chr8 178 56 1 235 View

Target gene [CCAT2] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - CCAT2 peak across samples

Peak Plot

> Dataset: GSE143026 - CCAT2 peak across samples

Peak Plot