HTLV1 Target gene Detail Information

> CDH13 Gene Search Result


Gene Information
Gene Name CDH13
Gene ID 1012
Gene Full Name cadherin 13
Gene Alias CDHH|P105
Transcripts ENSG00000140945
Virus HTLV1
Gene Type protein-coding
HPA Location Info Plasma membrane;Intracellular and membrane;
Membrane Info Plasma proteins, Predicted intracellular proteins
Uniport_ID P55290
HGNC ID HGNC:1753
OMIM ID 601364
Summary This gene encodes a member of the cadherin superfamily. The encoded protein is localized to the surface of the cell membrane and is anchored by a GPI moiety, rather than by a transmembrane domain. The protein lacks the cytoplasmic domain characteristic of other cadherins, and so is not thought to be a cell-cell adhesion glycoprotein. This protein acts as a negative regulator of axon growth during neural differentiation. It also protects vascular endothelial cells from apoptosis due to oxidative stress, and is associated with resistance to atherosclerosis. The gene is hypermethylated in many types of cancer. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, May 2011]
Target gene [CDH13] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6002406 chr16 125 117 4 246 View
6005848 chr16 79 0 0 79 View
6006251 chr16 22 28 22 72 View
6008584 chr16 5 5 34 44 View
6008793 chr16 11 30 1 42 View
6013400 chr16 0 18 1 19 View
6013832 chr16 12 6 0 18 View
6013898 chr16 18 0 0 18 View
6014936 chr16 8 3 4 15 View
6018587 chr16 9 0 0 9 View
6018687 chr16 5 1 3 9 View
6021302 chr16 5 1 0 6 View
6023699 chr16 2 2 0 4 View
6024145 chr16 2 0 2 4 View

Target gene [CDH13] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - CDH13 peak across samples

Peak Plot