Gene Information
|
Gene Name
|
CDH9 |
|
Gene ID
|
1007
|
|
Gene Full Name
|
cadherin 9 |
|
Gene Alias
|
- |
|
Transcripts
|
ENSG00000113100
|
|
Virus
|
HTLV1 |
|
Gene Type
|
protein-coding |
|
HPA Location Info
|
Golgi apparatus; 
|
|
Membrane Info
|
Predicted intracellular proteins, Predicted membrane proteins |
|
Uniport_ID
|
Q9ULB4
|
|
HGNC ID
|
HGNC:1768
|
|
OMIM ID
|
609974 |
|
Summary
|
This gene encodes a type II classical cadherin from the cadherin superfamily, integral membrane proteins that mediate calcium-dependent cell-cell adhesion. Mature cadherin proteins are composed of a large N-terminal extracellular domain, a single membrane-spanning domain, and a small, highly conserved C-terminal cytoplasmic domain. The extracellular domain consists of 5 subdomains, each containing a cadherin motif, and appears to determine the specificity of the protein's homophilic cell adhesion activity. Type II (atypical) cadherins are defined based on their lack of a HAV cell adhesion recognition sequence specific to type I cadherins. [provided by RefSeq, Jul 2008] |
Target gene [CDH9] related to VISs 
Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section
| DVID |
Chromosome |
HM |
TFBS |
CA |
Sum of Overlapped Records |
Detail |
| 6000884 |
chr5 |
5 |
391 |
357 |
753 |
View |
| 6013784 |
chr5 |
15 |
3 |
0 |
18 |
View |
| 6014885 |
chr5 |
15 |
0 |
0 |
15 |
View |
| 6027612 |
chr5 |
2 |
0 |
0 |
2 |
View |
| 6030047 |
chr5 |
0 |
1 |
0 |
1 |
View |
| 6031235 |
chr5 |
0 |
0 |
0 |
0 |
View |
Target gene [CDH9] related to Omics data
| Data ID |
Experiment type |
Sample number |
Platform |
|
C GSE94732
|
Chip-seq |
24 |
Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens) |
|
GSE168557
|
Expression array |
6 |
Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version) |
|
GSE52244
|
Expression array |
15 |
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] |
|
GSE10789
|
Expression array |
6 |
NCI/ATC Hs-OperonV3 |
|
GSE189602
|
Methylation profiling (Array) |
4 |
Infinium MethylationEPIC |
|
GSE136189
|
Methylation profiling (Array) |
40 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip |
When the gene can detect a peak in the dataset, a peak plot will be displayed.
> Dataset: GSE94732 - CDH9 peak across samples
|
Peak Plot
|
|
|
HTLV1 Target gene Detail Information
