Gene Information
|
Gene Name
|
CDK5RAP2 |
|
Gene ID
|
55755
|
|
Gene Full Name
|
CDK5 regulatory subunit associated protein 2 |
|
Gene Alias
|
C48|Cep215|MCPH3 |
|
Transcripts
|
ENSG00000136861
|
|
Virus
|
HBV |
|
Gene Type
|
protein-coding |
|
HPA Location Info
|
Centrosome, Basal body;Cell Junctions, Cytosol, Equatorial segment, Mid piece, Principal piece; 
|
|
Membrane Info
|
Disease related genes, Human disease related genes, Plasma proteins, Predicted intracellular proteins |
|
Uniport_ID
|
Q96SN8
|
|
HGNC ID
|
HGNC:18672
|
|
OMIM ID
|
608201 |
|
Summary
|
This gene encodes a regulator of CDK5 (cyclin-dependent kinase 5) activity. The protein encoded by this gene is localized to the centrosome and Golgi complex, interacts with CDK5R1 and pericentrin (PCNT), plays a role in centriole engagement and microtubule nucleation, and has been linked to primary microcephaly and Alzheimer's disease. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2013] |
Target gene [CDK5RAP2] related to VISs 
Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section
| DVID |
Chromosome |
HM |
TFBS |
CA |
Sum of Overlapped Records |
Detail |
| 1007925 |
chr9 |
17 |
4 |
2 |
23 |
View |
| 1011620 |
chr9 |
8 |
0 |
0 |
8 |
View |
| 1021903 |
chr9 |
8 |
0 |
0 |
8 |
View |
| 1043484 |
chr9 |
9 |
1 |
1 |
11 |
View |
Target gene [CDK5RAP2] related to Omics data
| Data ID |
Experiment type |
Sample number |
Platform |
|
GSE236281
|
RNA-seq |
12 |
Illumina MiSeq (Homo sapiens) |
|
C GSE35465
|
Chip-seq;RNA-seq |
6 |
Illumina HiSeq 2000 (Homo sapiens) |
|
GSE199850
|
scRNA-seq |
1 |
HiSeq X Ten (Homo sapiens) |
|
C GSE68402
|
Chip-seq |
26 |
Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens) |
|
GSE247322
|
scRNA-seq |
27 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
TCGA_LIHC_HBV
|
DNA methylation sequencing;RNA-seq |
97 |
TCGA |
|
C GSE270130
|
Chip-seq |
27 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
GSE224901
|
RNA-seq |
21 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
C GSE100400
|
Chip-seq;RNA-seq;4C_cccDNA |
31 |
Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus) |
|
GSE173897
|
RNA-seq |
95 |
Illumina HiSeq 4000 (Homo sapiens) |
|
GSE262515
|
RNA-seq |
21 |
Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus) |
|
GSE110345
|
RNA-seq |
4 |
Illumina HiSeq 2500 (Homo sapiens) |
|
C GSE131257
|
ATAC-seq;RNA-seq |
19 |
Illumina HiSeq 2500 (Homo sapiens) |
|
GSE94660
|
RNA-seq |
42 |
Illumina HiSeq 2500 (Homo sapiens) |
When the gene can detect a peak in the dataset, a peak plot will be displayed.
> Dataset: GSE35465 - CDK5RAP2 peak across samples
|
Peak Plot
|
> Dataset: GSE68402 - CDK5RAP2 peak across samples
|
Peak Plot
|
> Dataset: GSE270130 - CDK5RAP2 peak across samples
|
Peak Plot
|
> Dataset: GSE100400 - CDK5RAP2 peak across samples
|
Peak Plot
|
> Dataset: GSE131257 - CDK5RAP2 peak across samples
|
Peak Plot
|
|
|
HBV Target gene Detail Information
