HTLV1 Target gene Detail Information

> CHODL Gene Search Result


Gene Information
Gene Name CHODL
Gene ID 140578
Gene Full Name chondrolectin
Gene Alias C21orf68|MT75|PRED12
Transcripts ENSG00000154645
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cytosol;Centrosome;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q9H9P2
HGNC ID HGNC:17807
OMIM ID 607247
Summary This gene encodes a type I membrane protein with a carbohydrate recognition domain characteristic of C-type lectins in its extracellular portion. In other proteins, this domain is involved in endocytosis of glycoproteins and exogenous sugar-bearing pathogens. This protein localizes predominantly to the perinuclear region. Several transcript variants encoding a few different isoforms have been found for this gene. [provided by RefSeq, Feb 2011]
Target gene [CHODL] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6017106 chr21 4 7 0 11 View
6017147 chr21 0 11 0 11 View
6018531 chr21 1 6 2 9 View
6020855 chr21 5 1 0 6 View
6024177 chr21 0 2 2 4 View
6024709 chr21 3 0 0 3 View
6025820 chr21 0 3 0 3 View
6027672 chr21 1 1 0 2 View
6033362 chr21 0 0 0 0 View

Target gene [CHODL] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - CHODL peak across samples

Peak Plot