Gene Information
|
Gene Name
|
COL13A1 |
|
Gene ID
|
1305
|
|
Gene Full Name
|
collagen type XIII alpha 1 chain |
|
Gene Alias
|
CMS19|COLXIIIA1 |
|
Transcripts
|
ENSG00000197467
|
|
Virus
|
HTLV1 |
|
Gene Type
|
protein-coding |
|
HPA Location Info
|
|
|
Membrane Info
|
Disease related genes, Human disease related genes, Predicted intracellular proteins, Predicted membrane proteins |
|
Uniport_ID
|
Q5TAT6
|
|
HGNC ID
|
HGNC:2190
|
|
OMIM ID
|
120350 |
|
Summary
|
This gene encodes the alpha chain of one of the nonfibrillar collagens. The function of this gene product is not known, however, it has been detected at low levels in all connective tissue-producing cells so it may serve a general function in connective tissues. Unlike most of the collagens, which are secreted into the extracellular matrix, collagen XIII contains a transmembrane domain and the protein has been localized to the plasma membrane. The transcripts for this gene undergo complex and extensive splicing involving at least eight exons. Like other collagens, collagen XIII is a trimer; it is not known whether this trimer is composed of one or more than one alpha chain isomer. A number of alternatively spliced transcript variants have been described, but the full length nature of some of them has not been determined. [provided by RefSeq, Jul 2008] |
Target gene [COL13A1] related to VISs 
Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section
| DVID |
Chromosome |
HM |
TFBS |
CA |
Sum of Overlapped Records |
Detail |
| 6009554 |
chr10 |
8 |
12 |
16 |
36 |
View |
| 6012051 |
chr10 |
20 |
4 |
0 |
24 |
View |
| 6012151 |
chr10 |
4 |
19 |
0 |
23 |
View |
| 6012863 |
chr10 |
19 |
2 |
0 |
21 |
View |
| 6014409 |
chr10 |
16 |
0 |
0 |
16 |
View |
| 6017233 |
chr10 |
10 |
1 |
0 |
11 |
View |
Target gene [COL13A1] related to Omics data
| Data ID |
Experiment type |
Sample number |
Platform |
|
C GSE94732
|
Chip-seq |
24 |
Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens) |
|
GSE168557
|
Expression array |
6 |
Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version) |
|
GSE52244
|
Expression array |
15 |
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] |
|
GSE10789
|
Expression array |
6 |
NCI/ATC Hs-OperonV3 |
|
GSE189602
|
Methylation profiling (Array) |
4 |
Infinium MethylationEPIC |
|
GSE136189
|
Methylation profiling (Array) |
40 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip |
When the gene can detect a peak in the dataset, a peak plot will be displayed.
> Dataset: GSE94732 - COL13A1 peak across samples
|
Peak Plot
|
|
|
HTLV1 Target gene Detail Information
