HTLV1 Target gene Detail Information

> COL19A1 Gene Search Result


Gene Information
Gene Name COL19A1
Gene ID 1310
Gene Full Name collagen type XIX alpha 1 chain
Gene Alias COL9A1L|D6S228E
Transcripts ENSG00000082293
Virus HTLV1
Gene Type protein-coding
HPA Location Info Secreted to extracellular matrix;
Membrane Info Plasma proteins, Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID Q14993
HGNC ID HGNC:2196
OMIM ID 120165
Summary This gene encodes the alpha chain of type XIX collagen, a member of the FACIT collagen family (fibril-associated collagens with interrupted helices). Although the function of this collagen is not known, other members of this collagen family are found in association with fibril-forming collagens such as type I and II, and serve to maintain the integrity of the extracellular matrix. The transcript produced from this gene has an unusually large 3' UTR which has not been completely sequenced. [provided by RefSeq, Jul 2008]
Target gene [COL19A1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6005827 chr6 72 8 0 80 View
6023291 chr6 4 0 0 4 View
6028298 chr6 0 1 0 1 View

Target gene [COL19A1] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - COL19A1 peak across samples

Peak Plot