HTLV1 Target gene Detail Information

> COL21A1 Gene Search Result


Gene Information
Gene Name COL21A1
Gene ID 81578
Gene Full Name collagen type XXI alpha 1 chain
Gene Alias COLA1L|FP633
Transcripts ENSG00000124749
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cytosol;Secreted to extracellular matrix;
Membrane Info Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID Q96P44
HGNC ID HGNC:17025
OMIM ID 610002
Summary This gene encodes the alpha chain of type XXI collagen, a member of the FACIT (fibril-associated collagens with interrupted helices) collagen family. Type XXI collagen is localized to tissues containing type I collagen and maintains the integrity of the extracellular matrix. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2016]
Target gene [COL21A1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6011198 chr6 18 3 6 27 View
6029988 chr6 0 1 0 1 View
6030042 chr6 0 1 0 1 View

Target gene [COL21A1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - COL21A1 peak across samples

Peak Plot