HTLV1 Target gene Detail Information

> COLCA1 Gene Search Result


Gene Information
Gene Name COLCA1
Gene ID 399948
Gene Full Name colorectal cancer associated 1
Gene Alias C11orf92|CASC12|LOH11CR1F
Transcripts ENSG00000196167
Virus HTLV1
Gene Type ncRNA
HGNC ID HGNC:33789
OMIM ID 615693
Summary This gene encodes a transmembrane protein that localizes to granular structures, including crystalloid eosinophilic granules and other granular organelles. This gene, along with an overlapping opposite strand gene, has been implicated as a susceptibility locus for colorectal cancer. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Nov 2014]
Target gene [COLCA1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6023552 chr11 1 2 1 4 View

Target gene [COLCA1] related to Omics data
Data ID Experiment type Sample number Platform
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - COLCA1 peak across samples

Peak Plot